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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3469544_3470228_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3469544 - 3470228
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
CTCCCCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
GCAGCCCTAATA
Flanking Amino Acid:
KGESLGIKYEEGQSHRPTNP
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1
64.8
37.9
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
74.1
0.54
0.7
67.8
25.8
Minor 5ss
35.4
-1.7
2.8
36.6
41.7
Minor BPS
49.6
-0
1.8
57.54
42

Associated Gene:

Gene:
CSRP1
Ensembl Gene ID:
ENSAPLG00000012039
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012529
3467249 - 3473472
6224