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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3470398_3472945_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3470398 - 3472945
Intron Length:
2548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CCCTCTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAT
U12 Branch Point Sequence:
TGCAGGCTAATG
Flanking Amino Acid:
SSFHKSCFLCMVCKKNLDST
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
61.6
0.29
1.3
63.6
42.5
Major PPT
76.6
0.6
0.7
68.7
31.7
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
36.3
-1.1
2.4
41.06
43.5

Associated Gene:

Gene:
CSRP1
Ensembl Gene ID:
ENSAPLG00000012039
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012529
3467249 - 3473472
6224