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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3508639_3510415_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3508639 - 3510415
Intron Length:
1777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
CTCGTTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGAGTTCTAATA
Flanking Amino Acid:
VASCGYLNIAEYLISHGANV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
62.1
38.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
73.3
0.53
0.9
69.3
36
Minor 5ss
27.9
-2.5
3
27.6
37.5
Minor BPS
47.6
-0.1
1.7
56.76
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028831
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042230
3484229 - 3510705
26477