About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3510535_3510625_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3510535 - 3510625
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
TGCATGACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTCTGCATGACT
Flanking Amino Acid:
DLLLEQVKKQGGETRNLD*
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
69.6
0.49
1
59.5
39
Major PPT
62.5
0.28
1
54.7
40.2
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
55.9
0.27
2.1
80.17
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028831
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042230
3484229 - 3510705
26477