Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_35362_35672_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35362 - 35672

Intron Length:

311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGCGCA

5'SS Class:

major

3'SS Sequence:

GTCCCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

AGACGTGTCACC

Flanking Amino Acid:

TKFSVKDLNFRMFDVGGQRS

Intron Amino Acid Position:

197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

38.8

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

70.7

0.47

0.8

61.4

Minor 5ss

29.8

-2.3

3.4

38.3

46.9

Minor BPS

35.7

-1.1

2.4

43.34

37.9

Associated Gene:

Gene:

GNAT2

Ensembl Gene ID:

ENSAPLG00000028730

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046765

32929 - 36765

3837

ENSAPLT00000004462

32929 - 37861

4933