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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3569191_3581381_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3569191 - 3581381
Intron Length:
12191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
SPSPIAKTLRHERLSRLEAA
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
60.8
44.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
91
0.92
0.6
89
20
Minor 5ss
41
-1
2.8
48.7
41.5
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028213
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027542
3568718 - 3594332
25615