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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3584630_3584936_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3584630 - 3584936
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCATGAGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTCTAAAACT
Flanking Amino Acid:
KLSEMEEEMKFADPLC*
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.8
0.38
1
61.6
43.4
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
57.6
0.32
2
80.33
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028213
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030682
3574649 - 3594332
19684
ENSAPLT00000027542
3568718 - 3594332
25615