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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3602273_3602392_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3602273 - 3602392
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAC
U12 Branch Point Sequence:
CCTTTGCCACCC
Flanking Amino Acid:
PAFNETFTFKVPYQELGGKT
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
52.3
0.06
1.4
64.2
43
Major PPT
81.4
0.71
0.7
76.6
25.4
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
35.4
-1.1
2.4
45.95
43.3

Associated Gene:

Gene:
SYT2
Ensembl Gene ID:
ENSAPLG00000011038
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011495
3599501 - 3604371
4871