About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3602561_3602687_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3602561 - 3602687
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAA
U12 Branch Point Sequence:
CTGTCCGCAGCT
Flanking Amino Acid:
SLDYDFQANQLTVGILQAAE
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
58.2
0.2
1.1
49.1
38
Major PPT
78.8
0.65
0.7
69.6
31.2
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
45.4
-0.2
2.4
67.86
48.6

Associated Gene:

Gene:
SYT2
Ensembl Gene ID:
ENSAPLG00000011038
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011495
3599501 - 3604371
4871