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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3602805_3603864_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3602805 - 3603864
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACGGCC
5'SS Class:
major
3'SS Sequence:
GCAGGACCCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
TGCCGCAGGACC
Flanking Amino Acid:
NMKDMKSGNQDDDDAETGLT
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
62.8
37.8
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
52.4
0.06
1
39.8
39.3
Minor 5ss
30.6
-2.2
3.5
41.8
45.1
Minor BPS
40.5
-0.7
2
50.04
40.2

Associated Gene:

Gene:
SYT2
Ensembl Gene ID:
ENSAPLG00000011038
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011495
3599501 - 3604371
4871