Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3604035_3604121_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3604035 - 3604121

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTGAGTAGC

5'SS Class:

major

3'SS Sequence:

CACGTTCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

ACGGGCTGACCG

Flanking Amino Acid:

KFMNELNKIPLPPWALIAIA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.37

1.3

63.5

42.9

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

68.2

0.41

0.9

61.5

34.6

Minor 5ss

32.5

-2

2.7

41.4

38.2

Minor BPS

38.7

-1

2.1

37.7

Associated Gene:

Gene:

SYT2

Ensembl Gene ID:

ENSAPLG00000011038

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011495

3599501 - 3604371

4871