Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3678469_3680344_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3678469 - 3680344

Intron Length:

1876

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTTGC

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AATTTTTTAATT

Flanking Amino Acid:

ANKLQLDQLKEHCLNFVVKE

Intron Amino Acid Position:

542

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

67.7

38.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

88.4

0.86

0.9

94.6

18.5

Minor 5ss

46.7

-0.3

2.5

62.1

42.5

Minor BPS

75.3

0.87

82.84

Associated Gene:

Gene:

LZTR1

Ensembl Gene ID:

ENSAPLG00000009376

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029201

3671800 - 3705625

33826

ENSAPLT00000009824

3672901 - 3705625

32725