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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3710205_3711538_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3710205 - 3711538
Intron Length:
1334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
AGAACACCCTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGGATTTCAATG
Flanking Amino Acid:
TADWSQGKTWDTLLCLLLKP
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.3
70.9
41.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
43.4
-0.3
1.6
40.9
38.7
Minor 5ss
40.7
-1
3.1
50.9
45.6
Minor BPS
47.1
-0.3
1.6
48.29
39.8

Associated Gene:

Gene:
IPO9
Ensembl Gene ID:
ENSAPLG00000008676
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027564
3709390 - 3738428
29039