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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3711671_3712338_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3711671 - 3712338
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTCTCTTATA
Flanking Amino Acid:
GIRTRSKSAKNPERWTNIPL
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85
0.79
0.7
80.4
25.1
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
51
0.02
1.9
67.4
39.3

Associated Gene:

Gene:
IPO9
Ensembl Gene ID:
ENSAPLG00000008676
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036414
3709390 - 3738456
29067
ENSAPLT00000027564
3709390 - 3738428
29039
ENSAPLT00000009090
3709390 - 3738456
29067