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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3712473_3714492_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3712473 - 3714492
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAT
5'SS Class:
major
3'SS Sequence:
CCCTACTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTC
Flanking Amino Acid:
LFYGQYEGKVSSVALCKLLQ
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.6
42.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
66.1
0.36
0.8
57.5
33
Minor 5ss
31
-2.2
3.6
46.2
49.1
Minor BPS
68.2
0.55
1.5
76.09
34.4

Associated Gene:

Gene:
IPO9
Ensembl Gene ID:
ENSAPLG00000008676
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036414
3709390 - 3738456
29067
ENSAPLT00000027564
3709390 - 3738428
29039
ENSAPLT00000020878
3710426 - 3738456
28031
ENSAPLT00000009090
3709390 - 3738456
29067