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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3714660_3716123_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3714660 - 3716123
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTATGTACAGCT
Flanking Amino Acid:
QQAETLSVMQSLIMVFAHLV
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
90.4
0.91
0.6
85.3
22
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
42.1
-0.5
2.2
66.09
44.3

Associated Gene:

Gene:
IPO9
Ensembl Gene ID:
ENSAPLG00000008676
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036414
3709390 - 3738456
29067
ENSAPLT00000027564
3709390 - 3738428
29039
ENSAPLT00000020878
3710426 - 3738456
28031
ENSAPLT00000009090
3709390 - 3738456
29067