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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3717836_3718526_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3717836 - 3718526
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
GTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TCTGTTGTAACA
Flanking Amino Acid:
ADKIPAGLCATSIDILTTVV
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
88.1
0.86
0.7
85.4
29.3
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
49.8
-0
2.1
65.59
41.9

Associated Gene:

Gene:
IPO9
Ensembl Gene ID:
ENSAPLG00000008676
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036414
3709390 - 3738456
29067
ENSAPLT00000027564
3709390 - 3738428
29039
ENSAPLT00000020878
3710426 - 3738456
28031
ENSAPLT00000009090
3709390 - 3738456
29067