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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3718676_3718899_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3718676 - 3718899
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGCATT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
GTTTTAGTAAAT
Flanking Amino Acid:
TIAIFLKYSNDPVVASLAQD
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
74.8
41.3
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
88.8
0.87
0.6
81.4
30.7
Minor 5ss
56.7
0.23
2.5
75.6
40.1
Minor BPS
48.3
-0
2.3
74.95
41.3

Associated Gene:

Gene:
IPO9
Ensembl Gene ID:
ENSAPLG00000008676
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036414
3709390 - 3738456
29067
ENSAPLT00000027564
3709390 - 3738428
29039
ENSAPLT00000020878
3710426 - 3738456
28031
ENSAPLT00000009090
3709390 - 3738456
29067