About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3720052_3720988_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3720052 - 3720988
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTTTGTTTGGTT
Flanking Amino Acid:
NVVLADLNLSVSPFLLGRAL
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
80.1
0.68
0.8
77.9
36.6
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
IPO9
Ensembl Gene ID:
ENSAPLG00000008676
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027564
3709390 - 3738428
29039
ENSAPLT00000020878
3710426 - 3738456
28031
ENSAPLT00000009090
3709390 - 3738456
29067
ENSAPLT00000036414
3709390 - 3738456
29067
ENSAPLT00000035044
3717551 - 3738456
20906