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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3722412_3722546_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3722412 - 3722546
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAAAG
5'SS Class:
major
3'SS Sequence:
TCCTTCTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ACATTATTATTT
Flanking Amino Acid:
VRIAAQDLLLAVAADFQNES
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
66
39.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.2
0.68
0.9
76
32.5
Minor 5ss
39.1
-1.2
2.8
45.5
43.8
Minor BPS
48.3
-0
1.8
63.73
40.9

Associated Gene:

Gene:
IPO9
Ensembl Gene ID:
ENSAPLG00000008676
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027564
3709390 - 3738428
29039
ENSAPLT00000020878
3710426 - 3738456
28031
ENSAPLT00000009090
3709390 - 3738456
29067
ENSAPLT00000036414
3709390 - 3738456
29067
ENSAPLT00000035044
3717551 - 3738456
20906