About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3722646_3723342_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3722646 - 3723342
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TGGTATTCACCG
Flanking Amino Acid:
LLYMQITEEQIKVWTANPQQ
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
84.4
0.77
0.8
76.5
37.6
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
43.8
-0.6
2
49.09
44.5

Associated Gene:

Gene:
IPO9
Ensembl Gene ID:
ENSAPLG00000008676
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009090
3709390 - 3738456
29067
ENSAPLT00000036414
3709390 - 3738456
29067
ENSAPLT00000035044
3717551 - 3738456
20906
ENSAPLT00000027564
3709390 - 3738428
29039
ENSAPLT00000020878
3710426 - 3738456
28031