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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3723495_3724006_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3723495 - 3724006
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GCTTTTTTCACT
Flanking Amino Acid:
EEVEDPVDSDGEVLGFENLV
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
92.7
0.96
0.6
91.6
19.6
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
60.2
0.4
1.7
75.46
41.9

Associated Gene:

Gene:
IPO9
Ensembl Gene ID:
ENSAPLG00000008676
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009090
3709390 - 3738456
29067
ENSAPLT00000036414
3709390 - 3738456
29067
ENSAPLT00000035044
3717551 - 3738456
20906
ENSAPLT00000027564
3709390 - 3738428
29039
ENSAPLT00000020878
3710426 - 3738456
28031