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Intron Name: Anas_platyrhynchos_platyrhynchos_27_3725658_3729382_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3725658 - 3729382

Intron Length:

3725

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTCTGATTGATG

Flanking Amino Acid:

DSGFKMEVLKAVTALVKNYP

Intron Amino Acid Position:

271

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.8

77.9

38.6

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

91.6

0.94

0.6

84.4

30.5

Minor 5ss

33.6

-1.9

2.9

40.4

45.7

Minor BPS

-0.3

2.1

59.18

43.2

Associated Gene:

Gene:

IPO9

Ensembl Gene ID:

ENSAPLG00000008676

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027564

3709390 - 3738428

29039

ENSAPLT00000020878

3710426 - 3738456

28031

ENSAPLT00000009090

3709390 - 3738456

29067

ENSAPLT00000036414

3709390 - 3738456

29067

ENSAPLT00000035044

3717551 - 3738456

20906