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Intron Name: Anas_platyrhynchos_platyrhynchos_27_3731540_3731731_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3731540 - 3731731

Intron Length:

192

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGTA

5'SS Class:

strong_major

3'SS Sequence:

TTCCACCTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAC

U12 Branch Point Sequence:

TTTTCCTACAAG

Flanking Amino Acid:

AVHGAMRVLTEFTREVTDTQ

Intron Amino Acid Position:

172

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

81.7

32.2

Major BPS

67.4

0.43

1.3

78.4

35.2

Major PPT

74.8

0.56

0.8

66.1

35.5

Minor 5ss

35.2

-1.7

3.5

49.1

47.1

Minor BPS

-0.1

2.3

68.4

44.9

Associated Gene:

Gene:

IPO9

Ensembl Gene ID:

ENSAPLG00000008676

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020878

3710426 - 3738456

28031

ENSAPLT00000009090

3709390 - 3738456

29067

ENSAPLT00000036414

3709390 - 3738456

29067

ENSAPLT00000035044

3717551 - 3738456

20906

ENSAPLT00000027564

3709390 - 3738428

29039