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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3746196_3746386_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3746196 - 3746386
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ACCTTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
GTATACTTAACA
Flanking Amino Acid:
KSSVGPTNEKNECCRGKKDG
Intron Amino Acid Position:
1368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96.8
6.8
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
68.4
0.41
0.9
62.7
32.6
Minor 5ss
26.9
-2.6
4.1
42.9
44.7
Minor BPS
73.8
0.74
1.4
78.7
36.9

Associated Gene:

Gene:
KDM5B
Ensembl Gene ID:
ENSAPLG00000007715
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008058
3742068 - 3792601
50534