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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3750622_3750824_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3750622 - 3750824
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTGAC
5'SS Class:
major
3'SS Sequence:
AACTCCCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTCTCTGAACT
Flanking Amino Acid:
LSESKDTASAMATLGEARLK
Intron Amino Acid Position:
1117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
68.8
36.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
70.7
0.47
0.8
66.9
34.4
Minor 5ss
39.6
-1.2
3.1
52.3
45
Minor BPS
74.8
0.86
1.3
90.4
32.6

Associated Gene:

Gene:
KDM5B
Ensembl Gene ID:
ENSAPLG00000007715
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008058
3742068 - 3792601
50534