Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3750984_3751823_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3750984 - 3751823

Intron Length:

840

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TCCTGTTCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACAAAT

U12 Branch Point Sequence:

TTCCTGTTCACT

Flanking Amino Acid:

CENSPYSLLEVLCPRCDIGI

Intron Amino Acid Position:

1064

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.2

26.4

Major BPS

69.5

0.48

73.5

28.6

Major PPT

68.7

0.42

0.9

62.6

38.5

Minor 5ss

32.1

-2

3.5

46.6

48.7

Minor BPS

47.4

-0.1

2.4

72.32

44.9

Associated Gene:

Gene:

KDM5B

Ensembl Gene ID:

ENSAPLG00000007715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008058

3742068 - 3792601

50534