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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3753885_3754285_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3753885 - 3754285
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGCT
5'SS Class:
major
3'SS Sequence:
TTTGTATACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTGTATACCT
Flanking Amino Acid:
DDKARNLIKARPRQSLSSLV
Intron Amino Acid Position:
957

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.8
38.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
70.2
0.45
0.9
63.4
42.3
Minor 5ss
31
-2.2
3.7
47.8
47.9
Minor BPS
49.7
0.06
2.3
80.33
41.9

Associated Gene:

Gene:
KDM5B
Ensembl Gene ID:
ENSAPLG00000007715
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008058
3742068 - 3792601
50534