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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3758295_3758640_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3758295 - 3758640
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCCAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GTTAACTTAATA
Flanking Amino Acid:
ALEAKINNKRSLVSFKALIE
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
81.8
29.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
66.9
0.38
1
68.9
30.6
Minor 5ss
39.7
-1.1
3.1
53.3
37.6
Minor BPS
66.8
0.52
1.5
74.34
36.8

Associated Gene:

Gene:
KDM5B
Ensembl Gene ID:
ENSAPLG00000007715
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008058
3742068 - 3792601
50534