About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3758766_3759365_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3758766 - 3759365
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTTGCTCAAGT
Flanking Amino Acid:
CSCPTYKYKLGYRYTLEELY
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
38.3
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
72.3
0.5
0.9
63.3
43.1
Minor 5ss
49.3
-0
2.8
65.3
45.9
Minor BPS
57.4
0.31
2.3
84.08
42.8

Associated Gene:

Gene:
KDM5B
Ensembl Gene ID:
ENSAPLG00000007715
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008058
3742068 - 3792601
50534