About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3761174_3762162_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3761174 - 3762162
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTATGTTGT
5'SS Class:
weak_major
3'SS Sequence:
TCTTGTCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACCTAATG
Flanking Amino Acid:
PNTLMAHGVPVYRTNQCAGE
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.4
1.1
64.8
41.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
77.6
0.62
0.8
73.2
31.7
Minor 5ss
53.3
0.11
2.5
76.2
39.3
Minor BPS
50.9
-0.1
2
65.03
42.9

Associated Gene:

Gene:
KDM5B
Ensembl Gene ID:
ENSAPLG00000007715
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008058
3742068 - 3792601
50534