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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3766402_3766969_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3766402 - 3766969
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTTTCAATT
Flanking Amino Acid:
DWRCPQCLAQECNKPQEAFG
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.5
0.78
0.8
78.8
33.2
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
66.9
0.61
1.4
81.89
33.7

Associated Gene:

Gene:
KDM5B
Ensembl Gene ID:
ENSAPLG00000007715
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008058
3742068 - 3792601
50534