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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3772796_3777025_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3772796 - 3777025
Intron Length:
4230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
AGTTAAGTAATC
Flanking Amino Acid:
NLFQSGASLLCLQKPDLASD
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
81
0.7
0.9
77.8
36.7
Minor 5ss
45.7
-0.5
2.9
61.3
44.6
Minor BPS
44.8
-0.4
2.3
59.94
38.9

Associated Gene:

Gene:
KDM5B
Ensembl Gene ID:
ENSAPLG00000007715
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008058
3742068 - 3792601
50534