Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3779502_3792305_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3779502 - 3792305

Intron Length:

12804

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

TGTTGATGAAGC

Flanking Amino Acid:

TGICKVRPPPDWQPPFACDV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

69.7

35.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

94.5

0.6

29.4

Minor 5ss

-2.4

3.1

36.8

40.4

Minor BPS

44.5

-0.4

2.3

61.34

43.5

Associated Gene:

Gene:

KDM5B

Ensembl Gene ID:

ENSAPLG00000007715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008058

3742068 - 3792601

50534