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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3810359_3810562_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3810359 - 3810562
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TAGGAGGCAACT
Flanking Amino Acid:
FVDWCPTGFKVGINYQPPTV
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.2
25.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
74.5
0.55
0.8
69.9
31
Minor 5ss
28.5
-2.5
3.9
43.8
43.9
Minor BPS
34.8
-1
2.6
53.99
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007649
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008124
3810065 - 3819674
9610
ENSAPLT00000007931
3809968 - 3819674
9707
ENSAPLT00000021941
3809968 - 3819674
9707