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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3811244_3812604_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3811244 - 3812604
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
ATTGCTCTAACA
Flanking Amino Acid:
DLVLERIRKLSDQCTGLQGF
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
61.4
0.35
1.8
74.29
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007649
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021941
3809968 - 3819674
9707
ENSAPLT00000008124
3810065 - 3819674
9610
ENSAPLT00000007931
3809968 - 3819674
9707