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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3812754_3815805_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3812754 - 3815805
Intron Length:
3052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATGCG
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTAACTTTGAAA
Flanking Amino Acid:
VFVDLEPAVIDEVRNGTYRQ
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
72.1
37.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
85.6
0.8
0.7
84.4
30
Minor 5ss
32.4
-2
3.2
41.3
45.2
Minor BPS
60
0.31
1.4
69.01
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007649
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008124
3810065 - 3819674
9610
ENSAPLT00000007931
3809968 - 3819674
9707
ENSAPLT00000021941
3809968 - 3819674
9707