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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3818764_3819424_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3818764 - 3819424
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TCCCTCTACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACGAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
55.8
43.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.1
0.52
0.8
68.7
30.5
Minor 5ss
30.4
-2.2
3.3
34.5
43.8
Minor BPS
56.1
0.17
2.1
77.96
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007649
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008124
3810065 - 3819674
9610