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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3833443_3833748_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3833443 - 3833748
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TCACCTGTAACT
Flanking Amino Acid:
VLRGRLYAIAGYDGNSLLSS
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.5
35.6
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
73.4
0.53
1
69.4
36.8
Minor 5ss
30.3
-2.3
3.3
33.4
42
Minor BPS
55.2
0.24
2
73.91
43

Associated Gene:

Gene:
KLHL12
Ensembl Gene ID:
ENSAPLG00000007219
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007509
3831830 - 3852266
20437