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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3839941_3841803_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3839941 - 3841803
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
CTGACCTGACGT
Flanking Amino Acid:
MQGPRTRARLGANEVLLVIG
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
76.4
0.59
0.8
69.2
37
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
44.9
-0.3
2
61.09
48.2

Associated Gene:

Gene:
KLHL12
Ensembl Gene ID:
ENSAPLG00000007219
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007509
3831830 - 3852266
20437