Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3871946_3872280_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3871946 - 3872280

Intron Length:

335

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTTGT

5'SS Class:

major

3'SS Sequence:

TTTTCTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTGAC

U12 Branch Point Sequence:

TTTTCTTTCACA

Flanking Amino Acid:

AFVTLHSLTKLDLTDNQLVT

Intron Amino Acid Position:

409

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.1

72.1

40.1

Major BPS

60.1

0.25

35.6

Major PPT

91.2

0.93

0.6

87.3

23.1

Minor 5ss

44.8

-0.6

2.9

68.2

42.5

Minor BPS

75.9

0.81

1.6

86.93

31.8

Associated Gene:

Gene:

LGR6

Ensembl Gene ID:

ENSAPLG00000006712

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006999

3863007 - 3988466

125460