Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3880057_3880905_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3880057 - 3880905

Intron Length:

849

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

ATTTCCTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTCAT

U12 Branch Point Sequence:

AGTTACTCATTT

Flanking Amino Acid:

AFVGNPLLQTIHFYDNPIQF

Intron Amino Acid Position:

281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

29.3

Major BPS

87.1

0.92

0.7

85.9

22.5

Major PPT

0.83

0.7

81.4

29.7

Minor 5ss

35.2

-1.7

45.1

42.9

Minor BPS

48.3

-0

1.9

68.82

41.9

Associated Gene:

Gene:

LGR6

Ensembl Gene ID:

ENSAPLG00000006712

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033701

3879601 - 3989829

110229

ENSAPLT00000006999

3863007 - 3988466

125460