Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3880978_3882460_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3880978 - 3882460

Intron Length:

1483

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGATTT

5'SS Class:

major

3'SS Sequence:

TTTCTCCCAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

AATGCATTAATA

Flanking Amino Acid:

AIRTLGRLQELGFHNNNIKA

Intron Amino Acid Position:

257

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.1

74.9

35.8

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

78.7

0.65

0.8

74.5

29.3

Minor 5ss

46.8

-0.3

3.2

75.4

40.1

Minor BPS

59.9

0.31

1.7

68.3

37.9

Associated Gene:

Gene:

LGR6

Ensembl Gene ID:

ENSAPLG00000006712

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033701

3879601 - 3989829

110229

ENSAPLT00000006999

3863007 - 3988466

125460