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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3920280_3928985_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3920280 - 3928985
Intron Length:
8706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCTAATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATTTTTTAACA
Flanking Amino Acid:
AFSGLYSLKILMLQNNQLSR
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.8
0.67
0.8
74.4
34
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
81.2
0.98
1
83.95
29.4

Associated Gene:

Gene:
LGR6
Ensembl Gene ID:
ENSAPLG00000006712
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006999
3863007 - 3988466
125460