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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3929058_3939258_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3929058 - 3939258
Intron Length:
10201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CTTTTCACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTCTTTTCACT
Flanking Amino Acid:
TFRHLRFLEELRLSGNQISS
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.8
0.76
0.8
78.3
28.8
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
57.7
0.32
1.8
76.22
41

Associated Gene:

Gene:
LGR6
Ensembl Gene ID:
ENSAPLG00000006712
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006999
3863007 - 3988466
125460