Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3993800_3994446_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3993800 - 3994446

Intron Length:

647

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATATGGA

5'SS Class:

major

3'SS Sequence:

TTGTCCCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTTAT

U12 Branch Point Sequence:

CTGCAGTTATCC

Flanking Amino Acid:

KRAAPLLLHCSGGVSQMGTL

Intron Amino Acid Position:

2206

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

67.4

37.9

Major BPS

61.2

0.28

1.2

42.8

Major PPT

83.4

0.75

0.8

77.6

31.1

Minor 5ss

37.5

-1.4

3.2

49.4

46.8

Minor BPS

41.7

-0.6

2.3

52.39

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005702

3991303 - 4022202

30900