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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3995819_3996125_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3995819 - 3996125
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCCCCACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATGTTCTCATTC
Flanking Amino Acid:
SGLLQAWRIPGCSSGRDYLA
Intron Amino Acid Position:
2068

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.2
37.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
68.3
0.41
0.9
59.3
36.5
Minor 5ss
37
-1.5
3
50
46.3
Minor BPS
49.1
-0
1.8
60.29
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005477
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005702
3991303 - 4022202
30900