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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3998181_3998517_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3998181 - 3998517
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
ATTGCTCTACAT
Flanking Amino Acid:
MNRYQMIQTLSQYIFLHSCI
Intron Amino Acid Position:
1956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
45.8
-0.2
2
67.99
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005477
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005702
3991303 - 4022202
30900