Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3999230_3999708_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3999230 - 3999708

Intron Length:

479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTGAGTAAG

5'SS Class:

major

3'SS Sequence:

GACCCTTTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

GTGTCATCGACC

Flanking Amino Acid:

WTMREFKLWHEGLRAERHVS

Intron Amino Acid Position:

1857

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.3

38.4

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

76.3

0.59

0.9

72.6

37.2

Minor 5ss

-2.2

2.6

32.6

Minor BPS

50.3

-0

1.9

64.34

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005702

3991303 - 4022202

30900