Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_4001068_4001340_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4001068 - 4001340

Intron Length:

273

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTGCT

5'SS Class:

major

3'SS Sequence:

TGCTCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTCAG

U12 Branch Point Sequence:

GGTCTCAGACGT

Flanking Amino Acid:

SKNRYPHVLPYDHSRVKLSQ

Intron Amino Acid Position:

1745

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.1

72.2

37.5

Major BPS

53.2

0.08

1.7

65.3

43.7

Major PPT

83.4

0.75

0.8

80.7

31.3

Minor 5ss

38.2

-1.3

3.4

60.6

43.7

Minor BPS

37.7

-0.8

52.64

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005702

3991303 - 4022202

30900